Build error in orocos_kdl when catkin build Kinetic from source on Debian 8.0 (Jessie)

asked 2019-11-10 15:37:05 -0500

nehcuy gravatar image

I am installing MAVROS on a raspberry pi 3. I followed the instructions here on PX4 website, and when I was running the last step (Build Source) which is catkin build, I encountered error saying internal compiler error: Segmentation Fault. Here is the error code:

Profile:                     default
Extending:          [cached] /opt/ros/kinetic
Workspace:                   /home/pi/overlay_ws
Build Space:        [exists] /home/pi/overlay_ws/build
Devel Space:        [exists] /home/pi/overlay_ws/devel
Install Space:      [unused] /home/pi/overlay_ws/install
Log Space:          [exists] /home/pi/overlay_ws/logs
Source Space:       [exists] /home/pi/overlay_ws/src
DESTDIR:            [unused] None
Devel Space Layout:          linked
Install Space Layout:        None 
Additional CMake Args:       None
Additional Make Args:        None
Additional catkin Make Args: None
Internal Make Job Server:    True
Cache Job Environments:      False
Whitelisted Packages:        None
Blacklisted Packages:        None
Workspace configuration appears valid.
[build] Found '88' packages in 0.0 seconds.                                   
[build] Package table is up to date.                                          
Starting  >>> catkin                                                          
Finished  <<< catkin                               [ 1.1 seconds ]            
Starting  >>> genmsg                                                          
Starting  >>> cmake_modules                                                   
Starting  >>> cpp_common                                                      
Starting  >>> mavlink                                                         
Finished  <<< genmsg                               [ 1.0 seconds ]            
Starting  >>> orocos_kdl                                                      
Finished  <<< cmake_modules                        [ 0.9 seconds ]            
Starting  >>> ros_environment                                                 
Finished  <<< cpp_common                           [ 1.1 seconds ]            
Starting  >>> rosbag_migration_rule                                           
Finished  <<< ros_environment                      [ 1.1 seconds ]            
Finished  <<< rosbag_migration_rule                [ 1.0 seconds ]            
Errors     << orocos_kdl:make /home/pi/overlay_ws/logs/orocos_kdl/build.make.000.log
during GIMPLE pass: ssa
/home/pi/overlay_ws/src/orocos_kinematics_dynamics/orocos_kdl/src/chainiksolverpos_lma.cpp: In member function ‘Eigen::internal::mapbase_evaluator<Derived, PlainObjectType>::CoeffReturnType Eigen::internal::mapbase_evaluator<Derived, PlainObjectType>::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; PlainObjectType = Eigen::Matrix<double, -1, 1>]’:
/home/pi/overlay_ws/src/orocos_kinematics_dynamics/orocos_kdl/src/chainiksolverpos_lma.cpp:286:2: internal compiler error: Segmentation fault
 };//namespace KDL
0x76b0811f ???
0x76af2717 __libc_start_main
Please submit a full bug report, with preprocessed source if appropriate.
Please include the complete backtrace with any bug report.
See <file:///usr/share/doc/gcc-8/README.Bugs> for instructions.
make[2]: *** [src/CMakeFiles/orocos-kdl.dir/build.make:154: src/CMakeFiles/orocos-kdl.dir/chainiksolverpos_lma.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs.... 
make[1]: *** [CMakeFiles/Makefile2:141: src/CMakeFiles/orocos-kdl.dir/all] Error 2
make: *** [Makefile:130: all] Error 2
cd /home/pi/overlay_ws/build/orocos_kdl; catkin build --get-env orocos_kdl | catkin env -si  /usr/bin/make --jobserver-auth=6,7; cd -

The code indicates that the orocos_kdl failed building due to segmentation error. However, I could not figure out what happened or how to fix this bug. Can anyone has had this issue before could provide some tips?

Any help would be greatly appreciated!!!

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Seeing "RPi" and the fact that you're compiling template-heavy c++ code: you could just be running out of memory. Have you enabled swap and/or tried limiting everything to a single job only? catkin_make -j1 (equivalent to make -j1) would allow you to test that.

gvdhoorn gravatar image gvdhoorn  ( 2019-11-11 01:45:52 -0500 )edit