robot_localization and gmapping - gps has offset

edit

Trying to use robot_localization with gps to improve the accuracy. Currently, gmapping is responsible for map->odom transform. So, I have tried the following configuration. We use base_footprint instead of base_link. Otherwise we have tried to follow REP-105.

launch file (for robot_localization):

<launch>
  <rosparam command="load" file="$(find loc)/params/rk_localization.yaml" />

  <node pkg="robot_localization" type="ekf_localization_node" name="ekf_all" clear_params="true">
    <remap from="imu/data" to="/imu"/>
  </node>


  <node pkg="robot_localization" type="navsat_transform_node" name="navsat_transform" clear_params="true" output="screen">

      <!-- Placeholders for input remapping. Set your topic names as the "to" values.  -->
      <remap from="imu/data" to="/imu"/>
      <remap from="gps/fix" to="/gps"/>
      <remap from="odometry/filtered" to="/odom" />

  </node>
</launch>

yaml:

ekf_all:
  frequency: 30
  sensor_timeout: 0.1
  two_d_mode: false
  transform_time_offset: 0.0
  transform_timeout: 0.0
  print_diagnostics: true
  debug: false
  publish_tf: true

  map_frame: map
  odom_frame: odom
  base_link_frame: base_footprint
  world_frame: odom

  odom0: odom
  odom0_config: [false, false, false,
                 false, false, false,
                 true,  true,  true,
                 false, false, true,
                 false, false, false]
  odom0_queue_size: 10
  odom0_nodelay: true
  odom0_differential: false
  odom0_relative: false

  odom1: odometry/gps
  odom1_config: [true,  true,  false,
                 false, false, false,
                 false, false, false,
                 false, false, false,
                 false, false, false]
  odom1_queue_size: 10
  odom1_nodelay: true
  odom1_differential: false
  odom1_relative: false

  imu0: imu/data
  imu0_config: [false, false, false,
                true,  true,  true,
                false, false, false,
                true,  true,  true,
                true,  true,  true]
  imu0_nodelay: false
  imu0_differential: false
  imu0_relative: false
  imu0_queue_size: 10
  imu0_remove_gravitational_acceleration: true

  use_control: false

  process_noise_covariance: [1e-3, 0,    0,    0,    0,    0,    0,     0,     0,    0,    0,    0,    0,    0,    0,
                             0,    1e-3, 0,    0,    0,    0,    0,     0,     0,    0,    0,    0,    0,    0,    0,
                             0,    0,    1e-3, 0,    0,    0,    0,     0,     0,    0,    0,    0,    0,    0,    0,
                             0,    0,    0,    0.3,  0,    0,    0,     0,     0,    0,    0,    0,    0,    0,    0,
                             0,    0,    0,    0,    0.3,  0,    0,     0,     0,    0,    0,    0,    0,    0,    0,
                             0,    0,    0,    0,    0,    0.01, 0,     0,     0,    0,    0,    0,    0,    0,    0,
                             0,    0,    0,    0,    0,    0,    0.5,   0,     0,    0,    0,    0,    0,    0,    0,
                             0,    0,    0,    0,    0,    0,    0,     0.5,   0,    0,    0,    0,    0,    0,    0,
                             0,    0,    0,    0,    0,    0,    0,     0,     0.1,  0,    0,    0,    0,    0,    0,
                             0,    0,    0,    0,    0,    0,    0,     0,     0,    0.3,  0,    0,    0,    0,    0,
                             0,    0,    0,    0,    0,    0,    0,     0,     0,    0,    0.3,  0,    0,    0,    0,
                             0,    0,    0,    0,    0,    0,    0,     0,     0,    0,    0,    0.3,  0,    0,    0,
                             0,    0,    0,    0,    0,    0,    0,     0,     0,    0,    0,    0,    0.3,  0,    0,
                             0,    0,    0,    0,    0,    0,    0,     0,     0,    0,    0,    0,    0,    0.3,  0,
                             0,    0,    0,    0,    0,    0,    0,     0,     0,    0,    0,    0,    0,    0,    0.3]

  initial_estimate_covariance: [1e-9, 0,    0,    0,    0,    0,    0,    0,    0,    0,     0,     0,     0,    0,    0,
                                0,    1e-9, 0,    0,    0,    0,    0,    0,    0,    0,     0,     0,     0,    0,    0,
                                0,    0,    1e-9, 0,    0,    0,    0 ...