Problems migrating to Jade -> cannot find -l:/usr/lib/.../*.so

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I am trying to migrate a project from Indigo to Jade. When I run catkin_make I get cannot find -l: errors (output below).

I am running ubuntu 15.04 and installed ROS Jade via the package manager. As it looks like it might be a problem with ld I am using version 2.25

The installation of ROS appears to be fine. I do not have the problem if I create a new project with subscribers and publishers like the ROS tutorials

Does anyone have any ideas?

$ catkin_make
Base path: /home/**/catkin_ws
Source space: /home/**/catkin_ws/src
Build space: /home/**/catkin_ws/build
Devel space: /home/**/catkin_ws/devel
Install space: /home/**/catkin_ws/install
####
#### Running command: "make cmake_check_build_system" in "/home/**/catkin_ws/build"
####
####
#### Running command: "make -j8 -l8" in "/home/**/catkin_ws/build"
####
...
...
[  6%] Linking CXX executable ../../../../bin/a1
Building CXX object ../../../CMakeFiles/f.dir/dt.cxx.o
[  6%] /usr/bin/ld: cannot find -l:/usr/lib/x86_64-linux-gnu/libboost_signals.so
/usr/bin/ld: cannot find -l:/usr/lib/x86_64-linux-gnu/libboost_filesystem.so
/usr/bin/ld: cannot find -l:/usr/lib/x86_64-linux-gnu/libboost_system.so
...
collect2: error: ld returned 1 exit status
../../../../CMakeFiles/sc.dir/build.make:119: recipe for target 'bin/sc' failed
make[2]: *** [bin/sc] Error 1
CMakeFiles/Makefile2:1648: recipe for target '../../../../CMakeFiles/sc.dir/all' failed
make[1]: *** [../../../../CMakeFiles/sc.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
...
...

All the libraries it mentions are installed. For example

$ apt-cache policy libboost-signals-dev 
libboost-signals-dev:
  Installed: 1.55.0.2
  Candidate: 1.55.0.2
  Version table:
 *** 1.55.0.2 0
        500 http://us.archive.ubuntu.com/ubuntu/ vivid/universe amd64 Packages
        100 /var/lib/dpkg/status

CMakeLists.txt

The package is split up into many sub directories. So what follows below is the main package CMakeLists and then an example of one of the sub directory packages that is failing

cmake_minimum_required(VERSION 2.8.3)
project(main)

find_package(catkin REQUIRED COMPONENTS message_generation rospy)

catkin_package(CATKIN_DEPENDS roscpp)

...

set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11 -fPIC")

...

set(CMAKE_INCLUDE_CURRENT_DIR ON)

include_directories(
  ${CMAKE_CURRENT_SOURCE_DIR}
)

catkin_python_setup()

add_subdirectory(dir1)
add_subdirectory(dir2)
add_subdirectory(sc)
add_subdirectory(dir4)
add_subdirectory(dir5)

Example sub directory CMakeLists.txt. This is just one of many that are failing:

cmake_minimum_required(VERSION 2.4.6)

# Find ros dependencies...
include($ENV{ROS_ROOT}/core/rosbuild/FindPkgConfig.cmake)
pkg_check_modules(ros-roscpp REQUIRED roscpp)
pkg_check_modules(ros-cv_bridge REQUIRED cv_bridge)
pkg_check_modules(ros-image_transport REQUIRED image_transport)

set( sc_srcs
  main.cpp
  ScNode.cpp
  ${sc_moc_files} 
)

set( sc_hrs
  ScNode.h
)

# All ros libs are in the same directory
# so we just list one of them here
link_directories(
  ${ros-roscpp_LIBRARY_DIRS}
)

set( sc_libs
  ${ros-roscpp_LIBRARIES}
  ${ros-cv_bridge_LIBRARIES}
  ${ros-image_transport_LIBRARIES}
)

include_directories(
  ${ros-roscpp_conversions_INCLUDE_DIRS}
)

add_executable(sc ${sc_srcs} ${sc_hdrs})
target_link_libraries(sc ${sc_libs})
set_target_properties(sc PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin)