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In base local planner, there is a file called latched_stop_rotate_controller.cpp. In that function, the stop command is implemented using LatchedStopRotateController::stopWithAccLimits() [line 108] which uses acc_lim as an argument. I think you can define your own, say, decel_lim and use that instead in this function. I am not entirely sure as to whether they should be kept the same from the code's perspective though.