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first, try to install the ros navigation directly to your main ros which has the path of/opt/ros/kinetic/share u can install directly into your ros by

sudo apt-get install ros-kinetic-navigation-tutorials

then call

source /opt/ros/kinetic/setup.bash

after installing this, try to run your required node, if u are satisfied with the node then uninstall the all by calling

sudo apt-get remove ros-kinetic-navigation-tutorials

then try to delete all files that u already tried, try to download package and do catkin make.