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The installation tutorial you link to installs ROS from sources. That means that you download the sources for the relevant packages and then compile them on your target (in this case an RPi).

You cannot later mix that with binary packages that you install with apt.

Starting from source means that you'll have to build every pkg you want to use later from source as well.

Refer to the Maintaining a Source Checkout on the same page to see how you can do that.

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