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The only obvious thing that I would warn you about is the ordering; see my answer to: http://answers.ros.org/question/225447/how-to-move-packages-from-build-to-devel-folder/
The ordering requirement is the last item on this page: http://docs.ros.org/jade/api/catkin/html/howto/format2/catkin_overview.html and is also documented on the wiki: http://wiki.ros.org/catkin/CMakeLists.txt