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I checked out your repository and did the conversation. a working wrapper is:
<robot file="katana.dae">
<base>katana_base_link</base>
<effector>katana_gripper_link</effector>
<joints>katana_r_finger_joint katana_l_finger_joint</joints>
<closingdirection>-1 -1</closingdirection>
</robot>
Unfortunately your katana urdf is a little broken (see attached image). the base link katana0 is not attached to katana_base_link. this puts the robot initially in self-collision.