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I checked out your repository and did the conversation. a working wrapper is:

<robot file="katana.dae">
  <base>katana_base_link</base>
  <effector>katana_gripper_link</effector>
  <joints>katana_r_finger_joint katana_l_finger_joint</joints>
  <closingdirection>-1 -1</closingdirection>
</robot>

Unfortunately your katana urdf is a little broken (see attached image). the base link katana0 is not attached to katana_base_link. this puts the robot initially in self-collision.

katana arm is separated