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Sorry about that; I've been busy lately and didn't think to pull the latest debs into the ARM repo to support the changes to github.
I'm running a sync now, and you should be able to get the latest rosdep within the next hour or so. Sorry for the delay.
I'm curious: which architecture are you using, armel or armhf?
P.S: if you're having problems on an ARM board, please tag your questions with "ARM" so that I get notified.