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Hi narcispr,
if you launch rqt_gui when not all topics are being published yet, the plugins that depend on a topic will require you to set that topic again, but if you launch rqt_gui at the end, when everything is published, then your saved setup will keep track of the same topics.
Then, close rqt_gui first, then all nodes.
When you need to work again, run first all nodes, then rqt_gui.
That works for me.