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If it was trying to link against 1.40 that suggests that you previously compiled against 1.40 and are recompiling against 1.46.1 If so if you just "fix" the linking errors by replacing the libraries. Whatever was asking for the 1.40 version of boost needs to be recompiled. As such I'd suggest that you make sure to clean everything and verify that you have no *.o *.a *.so files anywhere in your tree before recompiling.

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