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I believe that the files are still in the /opt/ros prefix.
This REP 122 details the new filesystem hierarchy.
I believe that the intent of this new layout is to allow users to install directly into the /usr prefix if desired. Then all of the ROS files will map into /usr/bin, /usr/etc, /usr/lib, and so forth.
While it is possible to use a different prefix, as far as I know, files are still placed in the /opt/ros/fuerte prefix by default.