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How have you installed multiple versions of Eigen? The fix described in that github issue, is to remove all versions installed using the package manager then download and install exactly version 3.2.5 from the repository directly. You'll then need to re-compile LSD-SLAM for it to incorporate the newly installed version of Eigen. It is a header only library not a shared object so any code that isn't re-compiled will still include the old version.
Let us know how you get on with this.