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do you think that will be the case?

I think yes it could be the case because there is no grantee that the data coming from the first and second nodes will be synchronized.

Do you have any advice how to match the processed data with the data from the sensor?

one possible solution is to use the timestamp of the original data as a reference, in such a way that the first node time stamp raw data, the second node process data and send them with the same timestamp of the original data, the third node checks the time stamp of the raw and processed data, you can match them according to time stamp. I think there is no grantee that messages will be synchronized