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Just in case someone has a similiar problem, I had to adjust/conform the CMakeLists.txt to get eclipse import a package.

Compared to the active lines of a usual CMakeLists.txt, the on from that package was missing following lines, which might have disturbed eclipse as project and bin folder would be the same.

#set the default path for built executables to the "bin" directory
set(EXECUTABLE_OUTPUT_PATH ${PROJECT_SOURCE_DIR}/bin)
#set the default path for built libraries to the "lib" directory
set(LIBRARY_OUTPUT_PATH ${PROJECT_SOURCE_DIR}/lib)