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The total cost of a cell in a costmap is calculated from a set of layers that, together, define the whole costmap. The three most common layers and the associated documentation of all parameters are:
Nearly all the examples you have likely found on GitHub are using defining the parameters in their YAML files according to the documentation on the 3 previous links. Note that there is also an old, pre-Hydro way of defining costmap params that you may still find lurking on the internet, and there are a few additional layers that people have developed. This is all described at the end of the costmap_2d page.