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Why don't you just re-compile it in the ROS package you are developing? There are differences between OpenCV 2.2 and 2.3 so you are probably having some binary incompatibility issue. I also see references to flann to, so maybe there is an issue with your setup of OpenCV 2.3/flann and ROS's 2.2/flann.

I think the simplest answer is just re-compile using ROS libraries.

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