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Yep. This is a bug in the matplotlib backend of the current released version of rqt_plot. If you have pyqtgraph or qwtplot installed, those backends tend to do a better job at this. (Click the little gear icon in the widget's title bar to switch backends)

The latest version from source no longer has this bug, as of yesterday. See https://github.com/ros-visualization/rqt_common_plugins/pull/239 and https://github.com/ros-visualization/rqt_common_plugins/issues/235

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