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Catkin includes system packages before overlay

Hi all,

I'm not sure if I'm supposed to be using catkin yet but I figure it can't hurt to get a little ahead of the curve, especially since I'm trying to work with some stuff from Groovy (moveit). I've been trying to set up a workspace for catkin to overlay the most recent code from github over the debs and I'm having trouble compiling moveit_core because it's getting the system version of srdfdom even though I've overlayed a version from git in my workspace instead. This is the smallest .rosinstall that exhibits the problem:

- git: {local-name: src/srdfdom, uri: 'https://github.com/ros-planning/srdfdom.git'}
- git: {local-name: src/moveit_core, uri: 'https://github.com/ros-planning/moveit-core.git'}

I have been following the tutorials from here: http://www.ros.org/wiki/catkin/Tutorials/catkin_groovy_workspace

This is the output of make VERBOSE=1 for the file that fails to compile because it's looking at the wrong header:

cd /home/ibrahima/tmp/catkin_ws/build/moveit_core/kinematic_model && /usr/bin/c++   -Dmoveit_kinematic_model_EXPORTS -DROS_BUILD_SHARED_LIBS=1 -DROS_PACKAGE_NAME=\"moveit_core\" -Droscpp_VERSION_MAJOR=1 -Droscpp_VERSION_MINOR=9 -Droscpp_VERSION_PATCH=30 -fPIC -isystem /usr/include/eigen3 -I/opt/ros/groovy/include -I/home/ibrahima/tmp/catkin_ws/src/srdfdom/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematics_base/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_model/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_state/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_detection/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_detection_fcl/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_constraints/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_scene/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/constraint_samplers/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_interface/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_request_adapter/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/trajectory_processing/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/distance_field/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_distance_field/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematics_metrics/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/dynamics_solver/include    -o CMakeFiles/moveit_kinematic_model.dir/src/kinematic_model.cpp.o -c /home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_model/src/kinematic_model.cpp

It seems like /opt/ros/groovy/include is included before the overlay packages even though that shouldn't be the case. It seems like I'm having the same problem as this issue https://github.com/ros/catkin/issues/200 but that was fixed. What can I do to try to resolve this? Thanks!

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more environment information

Catkin includes system packages before overlay

Hi all,

I'm not sure if I'm supposed to be using catkin yet but I figure it can't hurt to get a little ahead of the curve, especially since I'm trying to work with some stuff from Groovy (moveit). I've been trying to set up a workspace for catkin to overlay the most recent code from github over the debs and I'm having trouble compiling moveit_core because it's getting the system version of srdfdom even though I've overlayed a version from git in my workspace instead. This is the smallest .rosinstall that exhibits the problem:

- git: {local-name: src/srdfdom, uri: 'https://github.com/ros-planning/srdfdom.git'}
- git: {local-name: src/moveit_core, uri: 'https://github.com/ros-planning/moveit-core.git'}

I have been following the tutorials from here: http://www.ros.org/wiki/catkin/Tutorials/catkin_groovy_workspace

This is the output of make VERBOSE=1 for the file that fails to compile because it's looking at the wrong header:

cd /home/ibrahima/tmp/catkin_ws/build/moveit_core/kinematic_model && /usr/bin/c++   -Dmoveit_kinematic_model_EXPORTS -DROS_BUILD_SHARED_LIBS=1 -DROS_PACKAGE_NAME=\"moveit_core\" -Droscpp_VERSION_MAJOR=1 -Droscpp_VERSION_MINOR=9 -Droscpp_VERSION_PATCH=30 -fPIC -isystem /usr/include/eigen3 -I/opt/ros/groovy/include -I/home/ibrahima/tmp/catkin_ws/src/srdfdom/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematics_base/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_model/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_state/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_detection/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_detection_fcl/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_constraints/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_scene/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/constraint_samplers/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_interface/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_request_adapter/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/trajectory_processing/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/distance_field/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_distance_field/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematics_metrics/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/dynamics_solver/include    -o CMakeFiles/moveit_kinematic_model.dir/src/kinematic_model.cpp.o -c /home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_model/src/kinematic_model.cpp

It seems like /opt/ros/groovy/include is included before the overlay packages even though that shouldn't be the case. It seems like I'm having the same problem as this issue https://github.com/ros/catkin/issues/200 but that was fixed. What can I do to try to resolve this? Thanks!

Edit: Here's my ROS related environment variables (gathered from env | grep ros which I have aliased as rosenv by the way; might be a useful alias for others I think).

ROS_PACKAGE_PATH=/home/ibrahima/tmp/catkin_ws/src/moveit_core:/home/ibrahima/tmp/catkin_ws/src/srdfdom
ROS_MASTER_URI=http://localhost:11311
ROS_VERSION=groovy
ROS_WORKSPACE=/home/ibrahima/tmp/catkin_ws
ROS_DISTRO=groovy
ROS_ETC_DIR=/opt/ros/groovy/etc/roslib

Catkin includes system packages before overlay

Hi all,

I'm not sure if I'm supposed to be using catkin yet but I figure it can't hurt to get a little ahead of the curve, especially since I'm trying to work with some stuff from Groovy (moveit). I've been trying to set up a workspace for catkin to overlay the most recent code from github over the debs and I'm having trouble compiling moveit_core because it's getting the system version of srdfdom even though I've overlayed a version from git in my workspace instead. This is the smallest .rosinstall that exhibits the problem:

- git: {local-name: src/srdfdom, uri: 'https://github.com/ros-planning/srdfdom.git'}
- git: {local-name: src/moveit_core, uri: 'https://github.com/ros-planning/moveit-core.git'}

I have been following the tutorials from here: http://www.ros.org/wiki/catkin/Tutorials/catkin_groovy_workspace

This is the output of make VERBOSE=1 for the file that fails to compile because it's looking at the wrong header:

cd /home/ibrahima/tmp/catkin_ws/build/moveit_core/kinematic_model && /usr/bin/c++   -Dmoveit_kinematic_model_EXPORTS -DROS_BUILD_SHARED_LIBS=1 -DROS_PACKAGE_NAME=\"moveit_core\" -Droscpp_VERSION_MAJOR=1 -Droscpp_VERSION_MINOR=9 -Droscpp_VERSION_PATCH=30 -fPIC -isystem /usr/include/eigen3 -I/opt/ros/groovy/include -I/home/ibrahima/tmp/catkin_ws/src/srdfdom/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematics_base/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_model/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_state/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_detection/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_detection_fcl/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_constraints/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_scene/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/constraint_samplers/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_interface/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_request_adapter/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/trajectory_processing/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/distance_field/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_distance_field/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematics_metrics/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/dynamics_solver/include    -o CMakeFiles/moveit_kinematic_model.dir/src/kinematic_model.cpp.o -c /home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_model/src/kinematic_model.cpp

The errors are things like /home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_model/src/kinematic_model.cpp:271:22: error: ‘const struct srdf::Model::EndEffector’ has no member named ‘parent_group_’ because the packaged version is missing this field but the overlay version has it (there are also some unrelated bugs that I think are just typos/things forgotten from refactoring or renaming stuff).

It seems like /opt/ros/groovy/include is included before the overlay packages even though that shouldn't be the case. It seems like I'm having the same problem as this issue https://github.com/ros/catkin/issues/200 but that was fixed. What can I do to try to resolve this? Thanks!

Edit: Here's my ROS related environment variables (gathered from env | grep ros which I have aliased as rosenv by the way; might be a useful alias for others I think).

ROS_PACKAGE_PATH=/home/ibrahima/tmp/catkin_ws/src/moveit_core:/home/ibrahima/tmp/catkin_ws/src/srdfdom
ROS_MASTER_URI=http://localhost:11311
ROS_VERSION=groovy
ROS_WORKSPACE=/home/ibrahima/tmp/catkin_ws
ROS_DISTRO=groovy
ROS_ETC_DIR=/opt/ros/groovy/etc/roslib

Catkin includes system packages before overlay

Hi all,

I'm not sure if I'm supposed to be using catkin yet but I figure it can't hurt to get a little ahead of the curve, especially since I'm trying to work with some stuff from Groovy (moveit). I've been trying to set up a workspace for catkin to overlay the most recent code from github over the debs and I'm having trouble compiling moveit_core because it's getting the system version of srdfdom even though I've overlayed a version from git in my workspace instead. This is the smallest .rosinstall that exhibits the problem:

- git: {local-name: src/srdfdom, uri: 'https://github.com/ros-planning/srdfdom.git'}
- git: {local-name: src/moveit_core, uri: 'https://github.com/ros-planning/moveit-core.git'}

I have been following the tutorials from here: http://www.ros.org/wiki/catkin/Tutorials/catkin_groovy_workspace

This is the output of make VERBOSE=1 for the file that fails to compile because it's looking at the wrong header:

cd /home/ibrahima/tmp/catkin_ws/build/moveit_core/kinematic_model && /usr/bin/c++   -Dmoveit_kinematic_model_EXPORTS -DROS_BUILD_SHARED_LIBS=1 -DROS_PACKAGE_NAME=\"moveit_core\" -Droscpp_VERSION_MAJOR=1 -Droscpp_VERSION_MINOR=9 -Droscpp_VERSION_PATCH=30 -fPIC -isystem /usr/include/eigen3 -I/opt/ros/groovy/include -I/home/ibrahima/tmp/catkin_ws/src/srdfdom/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematics_base/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_model/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_state/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_detection/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_detection_fcl/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_constraints/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_scene/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/constraint_samplers/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_interface/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/planning_request_adapter/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/trajectory_processing/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/distance_field/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/collision_distance_field/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematics_metrics/include -I/home/ibrahima/tmp/catkin_ws/src/moveit_core/dynamics_solver/include    -o CMakeFiles/moveit_kinematic_model.dir/src/kinematic_model.cpp.o -c /home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_model/src/kinematic_model.cpp

The errors are things like /home/ibrahima/tmp/catkin_ws/src/moveit_core/kinematic_model/src/kinematic_model.cpp:271:22: error: ‘const struct srdf::Model::EndEffector’ has no member named ‘parent_group_’ because the packaged version is missing this field but the overlay version has it (there are also some unrelated bugs that I think are just typos/things forgotten from refactoring or renaming stuff).

It seems like /opt/ros/groovy/include is included before the overlay packages even though that shouldn't be the case. It seems like I'm having the same problem as this issue https://github.com/ros/catkin/issues/200 but that was fixed. What can I do to try to resolve this? Thanks!

Edit: Here's my ROS related environment variables (gathered from env | grep ros which I have aliased as rosenv by the way; might be a useful alias for others I think).

ROS_PACKAGE_PATH=/home/ibrahima/tmp/catkin_ws/src/moveit_core:/home/ibrahima/tmp/catkin_ws/src/srdfdom
ROS_MASTER_URI=http://localhost:11311
ROS_VERSION=groovy
ROS_WORKSPACE=/home/ibrahima/tmp/catkin_ws
ROS_DISTRO=groovy
ROS_ETC_DIR=/opt/ros/groovy/etc/roslib

Edit2: My current lame workaround is to move the system header so that it doesn't get seen. Seems to be working so far.