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Did you manually messed with files in /opt/ros? Generally there is no need to do so.

  1. Uninstall all fuerte packages with config removal: sudo aptitude purge --prompt ros-fuerte~n
  2. Check directories for left files you don't want anymore:
    • /opt/ros
    • ~/.ros
    • ~/ros_workspace, ~/ros_stacks or similar
    • ...?
  3. Install fuerte