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rosdep install attempts to install system dependencies via apt.

If that fails on Debian, you need to install system dependencies another way.

If rospkg is the only dependency rosdep misses for diagnostic_updater, and you have installed it via pip, then you should be good to go (perform the next build step).

So rosdep is just blind for your pip installation of rospkg.

Remember to get the latest of rospkg from pip, though.