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I know this is a almost 2 years later, but there is a recommended way to install MoveIt in ROS on Windows for Melodic and Noetic in the following tutorial: https://ms-iot.github.io/ROSOnWindows/Moveit/moveit_tutorials.html

Setup:

mkdir c:\opt\chocolatey
set ChocolateyInstall=c:\opt\chocolatey
choco source add -n=ros-win -s="https://aka.ms/ros/public" --priority=1
choco upgrade ros-melodic-moveit -y --execution-timeout=0

Create workspace for MoveIt Tutorials:

:: activate ROS environment
c:\opt\ros\noetic\x64\setup.bat

:: checkout MoveIt tutorial packages
mkdir c:\moveit_ws\src
cd c:\moveit_ws\src

git clone https://github.com/ms-iot/moveit_tutorials.git -b 1.1.1
git clone https://github.com/ros-planning/panda_moveit_config.git -b melodic-devel
git clone https://github.com/frankaemika/franka_ros-release -b release/kinetic/franka_description

:: build packages
cd c:\moveit_ws
catkin_make

Sourcing:

c:\moveit_ws\devel\setup.bat