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Well, after several days of trying everything, I finally found the issue.

For this particular package, I do not know why, but to allow the rosrun command to find my pkg, I have first to make a rospack depends1 pkg_name ( after sourcing the devel/setup obviously). This command succeeds in locating my package, and then it seems to update it and then allows me to run the command rosrun. It doesn't seem to be a normal process, does anyone have encounter such similar behavior?

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