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There is no option to ignore that specific file.

As a workaround - instead of using the default (recursively crawling for packages which stops at that CMake file) - you can choose a different way to discover packages:

• If all packages are direct subdirectories of src you could call colcon with --paths src/*.
• If you need crawl recursively under src you can pass --base-paths src/*.

Both options are described when you invoke e.g. colcon build --help.