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I'm struggling with something similar. But my understanding is that the controller_manager will update the relevant setpoints for active controllers when this is called:

controller_manager_->update(ros::Time::now(), elapsed_time_);

I'm struggling with something similar. But my understanding is that the controller_manager will automatically update the relevant setpoints for active controllers when this is called:

controller_manager_->update(ros::Time::now(), elapsed_time_);