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Run the following commands for each package that throws up an error and replace the <package name=""> with whatever package throws up an error.

rosinstall_generator –rosdistro kinetic <package name> | tee -a  /tmp/mavros.rosinstall
wstool merge -t src /tmp/mavros.rosinstall
wstool update -t src -j2
catkin build

In your case it would be

rosinstall_generator –rosdistro kinetic geographic_msgs | tee -a  /tmp/mavros.rosinstall