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I know this is going to be the answer no one want to use, but in my case, this solve my problem (so please, no hate).
I do not know if my problem is the same as yours (but have similar syntoms)
in my case, I am using gentoo (which I know the support is experimental),
I tried with kinetic and melodic and both cases had same problem
catkin_make -j1 was getting stuck at Generating EusLisp manifest
and this just happened with packages that have to compile msgs
since I don't really care about having ROS-EusLisp compatibility, I modified
/opt/ros/kinetic/lib/geneus/gen_eus.py
and commented the line
geneus.geneus_main.genmain(sys.argv, 'gen_eus.py')
After that everything worked fine.
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