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I had a similar issue when installing ROS2 from source. It looks like its due to rosdep using a wrong python version. You will need to set python3 by replacing #! /usr/bin/python with #! /usr/bin/python3 in /usr/bin/rosdep:

sudo nano /usr/bin/rosdep

I had a similar issue when installing ROS2 from source. source alongside ROS1 kinetic. It looks like its due to rosdep using a wrong python version. You will need to set python3 by replacing #! /usr/bin/python with #! /usr/bin/python3 in /usr/bin/rosdep:

sudo nano /usr/bin/rosdep