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If you're not developing rosjava, then you can create an Eclipse project that will depend on the required jars instead of linked projects. Simply add an external dependency on ros.rosjava_core:rosjava:0.0.0-SNAPSHOT and the transitive dependencies (e.g. apache_xmlrpc) will be pulled in automatically.

Otherwise, AFAIK the answer is no. The eclipse plugin will generate dependencies as project dependencies.