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Here, on my Fedora 16 system, I managed to setup gazebo and it runs without any problems. What version of PCL are you using? I have
$ svn info
Path: .
URL: http://svn.pointclouds.org/ros/branches/electric/perception_pcl
Repository Root: http://svn.pointclouds.org/ros
Repository UUID: 96ee21a3-c2b3-4322-a94e-acd7bc47b802
Revision: 168
Node Kind: directory
Schedule: normal
Last Changed Author: mdixon
Last Changed Rev: 150
Last Changed Date: 2011-11-21 16:03:31 +0100 (Mon, 21 Nov 2011)
And for Gazebo:
$ svn info
Path: .
URL: https://code.ros.org/svn/ros-pkg/stacks/simulator_gazebo/tags/electric
Repository Root: https://code.ros.org/svn/ros-pkg
Repository UUID: eb33c2ac-9c88-4c90-87e0-44a10359b0c3
Revision: 38190
Node Kind: directory
Schedule: normal
Last Changed Author: hsu
Last Changed Rev: 38190
Last Changed Date: 2011-11-07 23:03:40 +0100 (Mon, 07 Nov 2011)