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The ament_cpplint has two ways to detect the root for your source code:
It determines the --root by looking for known names in the path hierarchy, namely include, src, test. If you are using the latest release of ROS 2 (Ardent) this will likely not work for you. There was recently a fix for this logic (see https://github.com/ament/ament_lint/pull/94). You might want to consider to use a newer version of this package from source to make this work for your use case.
It also looks for the root of a git repository in case your code is using that. I guess that is not the case for you though.
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