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This part of the tutorial means you need to use a terminal to navigate to the top level directory of your workspace then run catkin_make

For example if you have a workspace directory called my_project_ws inside your home directory you can open a terminal and type the following command to move to the workspace.

cd ~/my_project_ws

If you type the ls command (short for list) it will show the contents of this directory which should contain a src directory and possibly some other directories and files. Now you're in the right location you can build your package by typing:

catkin_make

Hope this clears this up for you.