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If I run your commands as stated I get the following output / error:
Prepare the source repository for a release.
Repository type: git
Found packages: moveit_controller_manager_example, moveit_ros_control_interface, moveit_fake_controller_manager, moveit_ros_perception, moveit_experimental, moveit_ros_move_group, moveit_setup_assistant, moveit_plugins, moveit_ros_benchmarks, moveit_ros_warehouse, moveit_kinematics, moveit_commander, moveit_ros_visualization, moveit_ros_planning_interface, moveit_ros_robot_interaction, moveit_ros_planning, moveit_core, moveit_planners, moveit_ros_manipulation, chomp_motion_planner, moveit_ros, moveit_simple_controller_manager, moveit_planners_ompl, chomp_interface, moveit
Two packages have different version numbers (0.9.1 != 0.9.0):
- ./moveit_ros/perception/package.xml
- ./moveit_plugins/moveit_controller_manager_example/package.xml
And those two packages actually have different version numbers (https://github.com/ros-planning/moveit/blob/90a62bfd59da94ae3621f516494081fca825721c/moveit_ros/perception/package.xml#L3 vs. https://github.com/ros-planning/moveit/blob/90a62bfd59da94ae3621f516494081fca825721c/moveit_plugins/moveit_controller_manager_example/package.xml#L3) as the error message indicates.
If I run the command on the latest commit on the kinetic-devel branch (e3ef9a64fe003a8a607f16fd9df112bc7a7d98bf) it seems to update all packages as expected: