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I created a pull request to solve this problem: https://github.com/ros-visualization/rqt_robot_plugins/pull/110

I hope this will be merged and solves your issue as well. If you want to import a rviz configuration into rqt you can just load it via the rviz menu bar and once you close rqt it will be saved in the rqt perspective (at least, if the merge request gets accepted).

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