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Hi I face with the same proble because of Python Anaconda can you type python --version to check? if it echo Python 2.x.x :: Anaconda 2.x.x (64-bit) problably the problem

step1. uncomment export PATH="/home/<your user>/anaconda3/bin:$PATH" in your ~/.bashrc

step2. $rm -r ~/catkin_ws/build

step3. catkin_make again

Delete your build folder after turning off anaconda. CMake will cache the Python executable it finds.

http://answers.ros.org/question/220546/catkin_make-failure-due-to-python-anaconda/

cheers.

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