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@Juan, you can use wstool for that purpose. See http://wiki.ros.org/wstool for the syntax. Typically, once you have properly configured your list of repositories in your .rosinstall file with their remote URI, you can pull with wstool update in the folder where your file is located (http://docs.ros.org/independent/api/rosinstall/html/rosws.html#update)

@Juan, you can use wstool for that purpose. See http://wiki.ros.org/wstool for the syntax. Typically, once you have properly configured your list of repositories in your .rosinstall file with their remote URI, you can pull with wstool update in the folder where your file is located (http://docs.ros.org/independent/api/rosinstall/html/rosws.html#update)

Edit: Now I understand your problem seems related to the fact that wstool uses the origin remote by default. You may want to have a look at this ticket and the discussion therein. In short the suggestions so far are :

  1. try using vcstool instead of wstool
  2. try out this WIP branch if you are willing to keep only one remote, or
  3. make a patch yourself and a pull request...