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If by completely deleting you mean "removing a repo and not making it reappear after wstool update" I don't think so. We've been using a small script that first removes a repo from a workspace and then deletes the folder afterwards: rm_from_workspace.sh (It's pretty simple, there might be nicer solutions out there).

If you really just want to get rid of a package you just have to remove the corresponding folder and that's it.