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I'm fairly certain that your error is related to catkin finding the wrong version of OpenCV. Do you by any chance have ros-indigo-opencv3 installed? You can check with dpkg -l |grep ros-indigo-opencv3. If it is installed, try removing with sudo apt-get remove ros-indigo-opencv3. If it is not installed, have you built OpenCV 3 from source? Or completed some other procedure to install it?

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