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Hi, I'm using also a pc/104 (advantech PCM-3362) with ROS indigo with no problem.

make sure to choose a PC/104 with ix86 CPU architecture in order to be able to install ubuntu and ROS with no source code compilation.

The only thing that i came across was, when i try to run rviz it notify me that doesnt support hardware openGL so i switched to software with just a simple command. This has to do with the embedded graphics but you can choose a PC/104 with hardware openGL. For me doesnt really matters because the PC is on a autonomous robot.

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