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Most information seems to say I should source indigo's setup.bash, which works when using make_libraries.py separately but I can't seem to include that in the catkin script. Seeing as it works correctly when separate, I suspect that may be the only issue. Anyone have a suggestion?

Can't you just do a source /opt/ros/indigo/setup.bash in the terminal before you run catkin_make?

Unless the rosserial build scripts start a new clean shell internally, that should setup your current shell with all the required environment variables.

Most information seems to say I should source indigo's setup.bash, which works when using make_libraries.py separately but I can't seem to include that in the catkin script. Seeing as it works correctly when separate, I suspect that may be the only issue. Anyone have a suggestion?

Can't you just do a source /opt/ros/indigo/setup.bash in the terminal before you run catkin_make?

Unless the rosserial build scripts start a new clean shell internally, that should setup your current shell with all the required environment variables.

Edit: I doubt this will solve your issue though, as without sourcing the Indigo setup.bash, you wouldn't be able to run catkin_make anyway.