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For me rqt is working fine in fuerte. I don't have hydro installed, only fuerte and groovy and there are no conflicts. It might be a problem in your ROS setup.

Can you check your PYTHONPATH environment variable to not contain any hydro paths. It should look similar to this when in a fuerte bash:

PYTHONPATH=/opt/ros/fuerte/lib/python2.7/dist-packages:/opt/ros/fuerte/lib/python2.7/dist-packages:

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