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Not sure if this will be useful for your specific case, but in one of the packages in starmac-ros-pkg there is a tool that reads in bag files for use in Python and can also save to a binary .mat file:

http://www.ros.org/doc/api/starmac_tools/html/classstarmac__tools_1_1load__bag_1_1BagLoader.html

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fix broken link, mention name of tool

Not sure if this will be useful for your specific case, but in one of the packages in starmac-ros-pkg there is a tool called bag2mat that reads in bag files for use in Python and can also save to a binary .mat file:

http://www.ros.org/doc/api/starmac_tools/html/classstarmac__tools_1_1load__bag_1_1BagLoader.htmlhttp://ros.org/doc/fuerte/api/starmac_tools/html/bag2mat_8py_source.html