ImportError: dynamic module does not define module export function (PyInit__tf2)

asked 2019-06-19 01:52:50 -0500

joonhyup
71 ●3 ●4 ●6

updated 2019-06-19 01:59:50 -0500

gvdhoorn
86574 ●283 ●1432 ●1054 http://cor.tudelft.nl/

When I tried to do tutorial of tf, I got an error as follw. And same error is occurred when I tried to do the tutorial of tf2.

How can I fix the problem? Thanks

Traceback (most recent call last):
  File "/home/bjh/catkin_ws/src/learning_tf2/nodes/static_turtle_tf2_broadcaster.py", line 8, in <module>
    import tf
  File "/home/bjh/catkin_ws/devel/lib/python2.7/dist-packages/tf/__init__.py", line 35, in <module>
    exec(__fh.read())
  File "<string>", line 30, in <module>
  File "/home/bjh/catkin_ws/devel/lib/python2.7/dist-packages/tf2_ros/__init__.py", line 35, in <module>
    exec(__fh.read())
  File "<string>", line 38, in <module>
  File "/home/bjh/catkin_ws/devel/lib/python2.7/dist-packages/tf2_py/__init__.py", line 35, in <module>
    exec(__fh.read())
  File "<string>", line 38, in <module>
ImportError: dynamic module does not define module export function (PyInit__tf2)

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answered 2019-06-19 15:52:14 -0500

r7vme

286 ●4 ●6 ●7

Issue is because tf2_ros was compiled for python2. Detailed discussion here.

To recompile for python3 (melodic):

Install some prerequisites to use Python3 with ROS.

sudo apt update
sudo apt install python3-catkin-pkg-modules python3-rospkg-modules python3-empy

Prepare catkin workspace

mkdir -p ~/catkin_ws/src; cd ~/catkin_ws
catkin_make
source devel/setup.bash
wstool init
wstool set -y src/geometry2 --git https://github.com/ros/geometry2 -v 0.6.5
wstool up
rosdep install --from-paths src --ignore-src -y -r

Finally compile for Python 3

catkin_make --cmake-args \
            -DCMAKE_BUILD_TYPE=Release \
            -DPYTHON_EXECUTABLE=/usr/bin/python3 \
            -DPYTHON_INCLUDE_DIR=/usr/include/python3.6m \
            -DPYTHON_LIBRARY=/usr/lib/x86_64-linux-gnu/libpython3.6m.so

Do not forget to always source your workspace!

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I am very appreciate for your help! It is done!

joonhyup ( 2019-06-20 18:15:30 -0500 )edit

Good to hear! @joonhyup can you please accept answer if it helped?

r7vme ( 2019-06-20 21:18:42 -0500 )edit

1

If your platform is not x86_64, don't forget to change to -DPYTHON_LIBRARY=/usr/lib/YOUR_ARCH_NAME-linux-gnu/libpython3.6m.so

Carls ( 2020-03-26 04:32:06 -0500 )edit

1

Also, I've got to install numpy by sudo apt-get install python3-numpy

Carls ( 2020-03-26 04:48:27 -0500 )edit

2

Hi. I just resolved the PyInit_tf2 error and now I am facing the PyInit_PyKDL error. I tried to do the same way for resolving PyInit_tf2 but it fails when executing wstool up. I would like to know is there any way to resolve the PyInit_PyKDL? Thanks.

DJ ( 2020-04-26 21:04:53 -0500 )edit

how about if we're using catkin build

azerila ( 2020-05-20 15:41:00 -0500 )edit

libpython3.6m.so does not exist ... it works despite of it

jester ( 2020-07-30 08:07:47 -0500 )edit

2

@azerila, catkin build --cmake-args \ -DCMAKE_BUILD_TYPE=Release \ -DPYTHON_EXECUTABLE=/usr/bin/python3 \ -DPYTHON_INCLUDE_DIR=/usr/include/python3.6m \ -DPYTHON_LIBRARY=/usr/lib/x86_64-linux-gnu/libpython3.6m.so

dendrarij ( 2020-08-04 07:32:42 -0500 )edit

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answered 2021-07-06 13:04:36 -0500

siddharthcb

100 ●9 ●17 ●19

errors like these are also caused by python version problems. so change the first line of the script from #! /usr/bin/env python to #! /usr/bin/env python2.7 worked for me

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This worked perfectly. The issue was that by default my python version was python 3.8.10, but ROS melodic requires python 2.7.

Using "which python" in the terminal showed me this.

hunterlineage1 ( 2023-07-24 19:05:10 -0500 )edit

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answered 2022-04-20 03:47:27 -0500

distro
167 ●45 ●78 ●99

@r7vme I followed your instrction and have geometry2 in my workspace but I dont know how to get my system to actually use the tf2 from this new geometry 2. In my codes do I uses #!/usr/bin/env python3 or do I change 3 to 2.7? I'm confused please help.

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answered 2022-03-12 07:39:11 -0500

medfa1
1

What you need to do is to make sure that you have the write PATH & PYTHONPATH by exporting the right paths

export PATH="/root/anaconda3/bin:$PATH"

export PYTHONPATH="/root/anaconda3/envs/venv/bin/python3.6"

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answered 2021-07-12 08:43:45 -0500

zlg9
43 ●5 ●9 ●13

updated 2021-07-12 08:53:55 -0500

In this approach, it is assumed that you use catkin_make. You will first need to verify your python3 version (run python3 --version), its installation path as well as your catkin workspace path and modify the following commands if needed. What follows holds for python3.6 on Ubuntu 18.04 (aarch64).

Navigate to your catkin_ws root directory:

cd /home/$USER/catkin_ws

Rebuild geometry with python3 (if you have installed it already):

catkin_make -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR=/usr/include/python3.6m -DPYTHON_LIBRARY=/usr/lib/aarch64-linux-gnu/libpython3.6m.so --only-pkg-with-deps geometry

And rebuild geometry2:

catkin_make -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR=/usr/include/python3.6m -DPYTHON_LIBRARY=/usr/lib/aarch64-linux-gnu/libpython3.6m.so --only-pkg-with-deps geometry2

You will only need to rebuild tf2_py to address issues with PyInit__tf2. You can either rebuild the whole geometry2 package as mentioned above or just rebuild tf2_py with python3. In my case, I have already both geometry and geometry2 on my ROS, so I rebuilt both.

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ImportError: dynamic module does not define module export function (PyInit__tf2)

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